People at NBCR

Administration | NCRR | RAC | Core 1 |  Core 2 | Core 3 | Core 4 | Core 5 | Others
Administration
 
Peter Arzberger, Ph.D. 
Principal Investigator / Director, NBCR
Director, Life Sciences Initiatives, UCSD
Chair, PRAGMA Steering Committee
University of California, San Diego
UC 402/SDSC 351
9500 Gilman Drive, MC 0043
La Jolla, CA 92093-0043

parzberg@ucsd.edu

858-822-1079 (voice)
858-822-4767 (fax)
More Info (url)

Wilfred W. Li, Ph.D.
Executive Director, NBCR
San Diego Supercomputer Center
University of California, San Diego
Atkinson Hall 3101
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
wilfred@sdsc.edu
858-822-0974 (voice)
858-822-0861 (fax)
More Info (url)


Teri Simas
Analyst, NBCR
Program Manager, PRAGMA
University of California, San Diego
9500 Gilman Drive, MC 0505
Atkinson Hall, Room 6404
La Jolla, CA 92093-0505
simast@sdsc.edu
858-534-5034 (voice)
858-534-5033 (fax)
Nora Makhsudova Fund Manager
Neurosciences Department
BSB Room : 1000
9500 Gilman Drive
La Jolla, CA 92093-0608
nora@ncmir.ucsd.edu
858-534-0276 (voice)
858-534-7497 (fax
)
Funding Agency
 
Mike Marron, Ph.D.
NIH-NCRR
Biotech Division
Director
One Democracy Plaza, Room 962
6701 Democracy Boulevard, MSC 4874
Bethesda, Maryland 20892-4874
marronm@mail.nih.gov
310-435-0753 (voice)
310-480-3659 (fax)
More Info (url)
 
Olga Brazhnik, Ph.D.
NIH-NCRR
Biotech Division
One Democracy Plaza, MSC4874
6701 Democracy Boulevard, MSC 4874
Bethesda, Maryland 20892-4874
brazhnik@mail.nih.gov
310-435-0755 (voice)
310-480-3775 (fax)

Resource Advisory Committee
 
John Wooley, Ph.D.
RAC Chairperson
Associate Vice Chancellor of Research
OGSR, UC700
9500 Gilman Drive
La Jolla, CA 92093-0043
jwooley@ucsd.edu  
858-822-3604 (voice)
858-822-3630 (fax
)
More Info (url)
  Chandra Bajaj
Chandrajit Bajaj, Ph.D.
Department of Computer Sciences & the Institute of Computational Engineeringing and Sciences,
Professor

Center for Computational Visualiazation
University of Texas, Austin
1 University Station, C0200
Austin, TX 78712-0027

bajaj@cs.utexas.edu
512-471-8870 (voice)
512-471-0982 (fax
)
More Info (url)
 
Alan Blatecky, Ph.D.
Renaissance Computing Institute
Deputy Director

Suite 540
100 Europa Drive
Chapel Hill, NC 27517

alan@renci.org
919-445-9643 (voice)
919-445-9640 (fax
)
More Info (url)
 
David Case, Ph.D.
Professor
Dept. Molecular Biology
The Scripps Research Institute
10500 N. Torrey Pines Rd
La Jolla, CA 92037

case@scripps.edu
858-784-8896 (voice)
858-784-9768 (fax
)
More Info (url)
 
Charlie Catlett, Ph.D.
Director, NSF TeraGrid Project
Senior Fellow, Computation Institute
Argonne National Laboratory
University of Chicago

Building 221
9700 Cass Avenue
Argonne, IL 60439

cec@uchicago.edu  
catlett@mcs.anl.gov  
630-252-7867 (voice)
630-252-1997 (fax
)
More Info (url)
 
Scott L. Delp , Ph.D.

Professor, Bioengineering Dept
Co-Director, Center for Biomedical Computation
School of Medicine, Stanford University

Stanford, CA

delp@stanford.edu
650-723-1230 (voice)
650-725-8544 (fax
)

 

Paul Gilna, Ph.D.
RAC Vice Chairperson
Calit2
UCSD, La Jolla CA 92093

pgilna@ucsd.edu
858-534-1901 (voice)
858-822-4633 (fax
)
 
Peter Hunter, Ph.D.
Bioengineering Institute
Professor, Director
University of Auckland
Private Bag 92019
Level 6, 70 Symonds St
Auckland, New Zealand

p.hunter@auckland.ac.nz
+64 9 -373-7599 X 88395(voice) +64 9 -367-7157(fax)

More Info (url)
 
Leslie Loew, Ph.D.
Professor
Dept Cell Biology
Director, Center for Biomedical Imaging Technology
University of Connecticut Health Center
Farmington, CT 06030
les@volt.uchc.edu  
860-679-3568 (voice)
860-679-1269 (fax
)
More Info (url)
 
George Michaels, Ph.D.
Director, Biomolecular Systems Initiative
Pacific Northwest National Laboratory
902 Battelle Blvd
Richland, WA 99352

george.michaels@pnl.gov  
509-376-2311 (voice)
509-375-6550 (fax
)
More Info (url)
 
Wilma K. Olson, Ph.D.
Mary I. Bunting Professor of Chemistry
Rutgers University, Piscataway
Chemistry & Chemical Biology
610 Taylor Road, Piscataway, NJ 08854

olson@rutchem.rutgers.edu  
732-445-3993 (voice)
732-445-5958 (fax
)
More Info (url)
 
Shinji Shimojo, Ph.D.
Director, Cybermedia Center
Professor
Osaka University

5-1 Mihogaoka, Ibaraki
Osaka 567-0047, Japan

shimojo@cmc.osaka-u.ac.jp  
+ 81 6-6879-8794 (voice)
+ 81 6-6850-6589 (fax
)
More Info (url)
Administration | NCRR | RAC | Core 1 |  Core 2 | Core 3 | Core 4 | Core 5 | Others
Core 1: Integrative Modeling of subcellular Processes: Application to Synaptic Activity and Pharmaceutical Discovery
 

J. Andrew McCammon, Ph.D.

Core Lead
Joseph E. Mayer Professor, Department of Chemistry and Biochemistry Professor
Department of Pharmacology
Department of Chemistry & Biochemistry
Investigator, Howard Hughes Medical Institute

University of California, San Diego
4216 Urey Hall
9500 Gilman Drive, 0365
La Jolla, CA 92093-0365
jmccammon@ucsd.edu
858-534-2905 (voice)
858-534-7042 (fax)
Administrative Assistant: Patti Craft 4238 Urey Hall
858-534-2905 (voice)
858-734-7042 (fax)
pcraft@mccammon.ucsd.edu

Nathan A. Baker, Ph.D.

Associate Professor
Washington University in St. Louis
School of Medicine
Dept. of Biochemistry and Molecular Biophysics
Center for Computational Biology
700 S. Euclid Ave., Campus Box 8036, St. Louis, MO 63110
314-362-2040 (voice)
314-362-0234 (fax)
baker@biochem.wustl.edu
PGP key:
http://cholla.wustl.edu/~baker/pubkey.asc

Michael Holst, Ph.D.

Professor, Department of Mathematics
University of California, San Diego
5739 Applied Physics and Mathematics Building
9500 Gilman Drive, 0112
La Jolla, CA 92093-0112
mholst@ucsd.edu
858-534-4899 (voice)
858-534-5273 (fax)

Philip M. Papadopoulos, Ph.D.  
Michel Sanner, Ph.D.  
Yuhui Cheng Department of Chemistry and Biochemistry
9500 Gilman Dr.
La Jolla, CA 92093
ycheng@mccammon.ucsd.edu

Todd Dolinsky

Washington University in St. Louis
School of Medicine
Dept. of Biochemistry and Molecular Biophysics
Center for Computational Biology
700 S. Euclid Ave., Campus Box 8036, St. Louis, MO 63110
314-362-2040 (voice)
314-362-0234 (fax)
todd@ccb.wustl.edu

Robert Konecny, Ph.D. Department of Chemistry and Biochemistry
Urey Hall 2214
9500 Gilman Dr.
La Jolla, CA 92093-0365
rok@ucsd.edu
838-822-5683 (voice)
858-534-7042 (fax)
Zeyun Yu, Ph.D.

Department of Mathematics
5739 Applied Physics and Mathematics Building
9500 Gilman Drive, 0112
La Jolla, CA 92093-0112
zeyun@cam.ucsd.edu
858-534-4899 (voice)
858-534-5273 (fax)

Core 2: Data Integration and Analytic Tools for Molecular Sequences
 
Amarnath Gupta, Ph.D. 
Core Lead
Adj. Professor, Department of CSE
San Diego Supercomputer Center
University of California, San Diego
SDSC 407
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
gupta@sdsc.edu
858-822-0994 (voice)
858-534-5113 (fax)
Li Chen, Ph.D. San Diego Supercomputer Center
SDSC 407
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
lichen@sdsc.edu

858-822-5458 (voice)
858-534-5113  (fax)
Sandeep Gupta San Diego Supercomputer Center
SDSC 463
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
sandeep@sdsc.edu

858-822-0868 (voice)
858-534-5113 (fax)
Administration | NCRR | RAC | Core 1 |  Core 2 | Core 3 | Core 4 | Core 5 | Others
Core 3: Structurally and Functionally Integrated Modeling of Cell and Organ Biophysics
 
Andrew McCulloch, Ph.D. 
Core Lead
Professor & Chair, Department of Bioengineering
231 Powell-Focht Bioengineering Hall
University of California, San Diego
9500 Gilman Drive, MC 0412
La Jolla, CA 92093-0412

amcculloch@ucsd.edu

858-534-2547 (voice)
858-534-6896 (fax)
Faculty Assistant: Robbie Gandy 858-822-4997 (voice)
858-534-5722 (fax)
Room 231 Powell-Focht Bioengineering Hall
rgandy@bioeng.ucsd.edu
 

Anouchka Mihaylova, Ph.D.

Assistant Research Scientist
University of California, San Diego
9500 Gilman Drive, 0427
La Jolla, CA 92093-0427
amihaylova@ucsd.edu
858-822-4872 (voice)
Mark Ellisman, Ph.D.  
Philip M. Papadopoulos, Ph.D.  
Michel Sanner, Ph.D.  
Fred Lionetti Department of Bioengineering
University of California, San Diego
9500 Gilman Drive, 0427
La Jolla, CA 92093-0427
Ankur Jain Department of Bioengineering
PFBH 243
University of California, San Diego
9500 Gilman Drive, 0427
La Jolla, CA 92093-0427
Adam Wright Department of Bioengineering
PFBH 243
University of California, San Diego
9500 Gilman Drive, 0427
La Jolla, CA 92093-0427
Core 4: Visualization Environments for Multi-Scale Biomedical Modeling
 
Michel Sanner, Ph.D.

Core Lead
Associate Professor,
Department of Molecular Biology

The Scripps Research Institute, MB5
10550 North Torrey Pines Road
La Jolla, CA 92037
sanner@scripps.edu
858-784-2341 (voice)
858-784-2860 (fax)

 
Arthur J. Olson, Ph.D. 
Professor, Department of Molecular Biology
The Scripps Research Institute, MB5
10550 North Torrey Pines Road
La Jolla, CA 92037
olson@scripps.edu
858-784-9702 (voice)
858-784-2860 (fax)
Senior Administrative Assistant: Peggy Graber
858-784-2526 (voice)
858-784-2860 (fax)
graber@scripps.edu
Sargis Dallakyan, Ph.D.
 
The Scripps Research Institute
Department of Molecular Biology
Room MB112/Mail Drop MB5
10550 North Torrey Pines Road
La Jolla, CA 92037
(858) 784-9559 (voice)
(858) 784-2860 (fax)
sargis@scripps.edu
Ruth Huey, Ph.D. The Scripps Research Institute
Department of Molecular Biology
Room MB112/Mail Drop MB5
10550 North Torrey Pines Road
La Jolla, CA 92037
(858) 784-2334 (voice)
(858) 784-2860 (fax)
rhuey@scripps.edu

Garrett Morris, Ph.D.
The Scripps Research Institute
Department of Molecular Biology
Room MB112/Mail Drop MB5
10550 North Torrey Pines Road
La Jolla, CA 92037
(858) 784-2292(voice)
(858) 784-2860 (fax)
garrett@scripps.edu
Anna Omelchenko The Scripps Research Institute
Department of Molecular Biology
Room MB112/Mail Drop MB5
10550 North Torrey Pines Road
La Jolla, CA 92037
(858) 784-2292(voice)
(858) 784-2860 (fax)
annao@scripps.edu
Guillaume Vareille The Scripps Research Institute
Department of Molecular Biology
Room MB112/Mail Drop MB5
10550 North Torrey Pines Road
La Jolla, CA 92037
(858) 784-2292(voice)
(858) 784-2860 (fax)
vareille@scripps.edu
Administration | NCRR | RAC | Core 1 |  Core 2 | Core 3 | Core 4 | Core 5 | Others
Core 5: Grid Computing and Analysis for Multi-Scale Biomedical Applications
  Peter Arzberger, Ph.D. Principal Investigator
Core Lead

Mark Ellisman, Ph.D.
Professor, Department of Neurosciences
University of California, San Diego
3032 Basic Sciences Building
9500 Gilman Drive, MC 0608
La Jolla, CA 92093-0608
mhellisman@ucsd.edu
858-534-2251 (voice)
Administrative Specialist: Grace Osborne 858-534-0276 (voice)
858-534-7497 (fax)
gosborne@ncmir.ucsd.edu

Philip M. Papadopoulos, Ph.D.
Program Director, Grid and Cluster Computing
Co-PI, PRAGMA
San Diego Supercomputer Center
University of California, San Diego
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
phil
@sdsc.edu
858-822-3628 (voice)
858-822-5407 (fax)
Michel Sanner, Ph.D.  
Wilfred W. Li, Ph.D.  
Amarnath Gupta, Ph.D.  

Karan Bhatia
San Diego Supercomputer Center
SDSC 365
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
kurt@sdsc.edu

858-534-5019(voice)
858-822-0861 (fax)
Lily Cheng Calit2
Atkinson 1000
Calit2
9500 Gilman Dr
La Jolla, CA 92093
lscheng@ucsd.edu
Lu Dai, M.S. Department of Neurosciences
University of California, San Diego
Calit2 CRBS
9500 Gilman Drive, MC 0608
La Jolla, CA 92093-0608
ldai@ncmir.ucsd.edu
858-534-4583 (voice)
Wes Goodman CRBS/SDSC
Atkinson Hall 3084
9500 Gilman Drive, MC 0440
La Jolla, CA 92093-0505
wgoodman@ucsd.edu
858-534-0587 (voice)
858-822-0861 (fax)

Sriram Krishnan, Ph.D.
San Diego Supercomputer Center
SDSC 305
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
sriram@sdsc.edu

858-822-5425(voice)
858-822-0861 (fax)
Rick Lawrence, Ph.D. CRBS
SDSC 353
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
lawrence@sdsc.edu

858-822-0894 (voice)
858-822-0861 (fax)
Abel Lin CRBS
BSB 1000
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
awlin@ncmir.ucsd.edu

858-822-5458 (voice)
858-534-5113  (fax)
Jane Ren, MS CRBS/SDSC
SDSC 362
9500 Gilman Dr.
La Jolla, CA 92093
j2ren@ucsd.edu
(858) 534-0587 (voice)
(858) 822-0861 (fax)
Luca Clementi, MS CRBS/SDSC
Atkinson 1000
9500 Gilman Drive, MC 0440
La Jolla, CA 92093-0440
clem@sdsc.edu

858-534-0587(voice)
858-822-0861 (fax)

Timothy Kaiser, Ph.D.
San Diego Supercomputer Center
SDSC 357
9500 Gilman Drive, MC 0505
La Jolla, CA 92093-0505
tkaiser@sdsc.edu

858-534-5157 (voice)
858-822-0861 (fax)


Dong Xu, Ph.D.
Calit2
Atkinson 1000
9500 Gilman Drive, MC 0440
La Jolla, CA 92093-0440
d1xu@ucsd.edu

858-534-0587 (voice)
858-822-0861 (fax)

Administration | NCRR | RAC | Core 1 |  Core 2 | Core 3 | Core 4 | Core 5 | Others
Collaborative Projects NBCR has more than 10 collaborative projects in Universities  across the United States.
Service Projects NBCR research and development enables a number of related projects as examples of biomedical community service.
   

This Resource is supported by the National Institutes of Health (NIH) through a National Center for Research Resources program grant (P 41 RR08605) to researchers at the University of California, San Diego, including the San Diego Supercomputer Center (SDSC), the California Institute of Telecommunications and Information Technology (Calit2), The Center for Research in Biological Systems (CRBS), The Scripps Research Institute (TSRI), and Washington University in St. Louis.


Nation Center For
Research Resources

National Biomedical Computation Resource
University of California, San Diego
9500 Gilman Drive, MC 0505 - La Jolla, CA 92093-0505
Phone: (858) 822-1079 - Fax: (858) 822-5407
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