Citations

Search Citations
Citations
451. Zhi, Degui, Krishna, S. Sri, Cao, Haibo, Pevzner, Pavel, Godzik, Adam, (2006), "Representing and comparing protein structures as paths in three-dimensional space.", BMC bioinformatics, 7, 1: pg: 460, 1471-2105, (DOI: 10.1186/1471-2105-7-460).
BibTex | EndNote
452. Zhi, Degui, Raphael, Benjamin J., Price, Alkes L., Tang, Haixu, Pevzner, Pavel A., (2006), "Identifying repeat domains in large genomes.", Genome biology, 7, 1: pg: R7, 1465-6914 (Electronic)$\backslash$r1465-6906 (Link, (DOI: 10.1186/gb-2006-7-1-r7).
BibTex | EndNote
453. Zhang, Deqiang, Suen, Jason, Zhang, Yongjie, Song, Yuhua, Radic, Zoran, Taylor, Palmer, Holst, Michael J., Bajaj, Chandrajit, Baker, Nathan a, McCammon, J. Andrew, (2005), "Tetrameric mouse acetylcholinesterase: continuum diffusion rate calculations by solving the steady-state Smoluchowski equation using finite element methods.", Biophysical journal, 88, 3: pg: 1659--65, 00063495 0006-3495, (DOI: 10.1529/biophysj.104.053850).
BibTex | EndNote
454. Zhang, Deqiang, McCammon, J. Andrew, (2005), "The association of tetrameric acetylcholinesterase with ColQ tail: A block normal mode analysis", PLoS Computational Biology, 1, 6: pg: 0484--0491, 1553734X, (DOI: 10.1371/journal.pcbi.0010062).
BibTex | EndNote
455. Zaitlen, Noah A., Kang, Hyun Min, Feolo, Michael L., Sherry, Stephen T., Halperin, Eran, Eskin, Eleazar, (2005), "Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP.", Genome research, 15, 11: pg: 1594--600, 1088-9051 (Print) 1088-9051, (DOI: 10.1101/gr.4297805).
BibTex | EndNote
456. Weis, Sara M., Zimmerman, Scott D., Shah, Maithili, Covell, James W., Omens, Jeffrey H., Ross, John, Dalton, Nancy, Jones, Ying, Reed, Charles C., Iozzo, Renato V., McCulloch, Andrew D., (2005), "A role for decorin in the remodeling of myocardial infarction.", Matrix biology : journal of the International Society for Matrix Biology, 24, 4: pg: 313--24, 0945-053X (Print)$\backslash$r0945-053X (Linking) (DOI: 10.1016/j.matbio.2005.05.003).
BibTex | EndNote
457. Trylska, Joanna, Tozzini, Valentina, McCammon, J. Andrew, (2005), "Exploring global motions and correlations in the ribosome.", Biophysical journal, 89, 3: pg: 1455--63, 0006-3495 (Print) 0006-3495, (DOI: 10.1529/biophysj.104.058495).
BibTex | EndNote
458. Trylska, Joanna, McCammon, J. Andrew, Brooks, Charles L., (2005), "Exploring assembly energetics of the 30S ribosomal subunit using an implicit solvent approach", Journal of the American Chemical Society, 127, 31: pg: 11125--11133, 0002-7863 (Print)$\backslash$n0002-7863 (Linking) (DOI: 10.1021/ja052639e).
BibTex | EndNote
459. Sosinsky, Gina E., Deerinck, Thomas J., Greco, Rocco, Buitenhuys, Casey H., Bartol, Thomas M., Ellisman, Mark H., (2005), "Development of a model for microphysiological simulations: small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.", Neuroinformatics, 3, 2: pg: 133--62, 1539-2791 (Print) 1539-2791, (DOI: 10.1385/NI:3:2:133).
BibTex | EndNote
460. Sims, Peter A., Wong, Chung F., Vuga, Danka, McCammon, J. Andrew, Sefton, Bartholomew M., (2005), "Relative contributions of desolvation, inter- and intramolecular interactions to binding affinity in protein kinase systems", Journal of Computational Chemistry, 26, 7: pg: 668--681, 0192-8651 (Print)$\backslash$r0192-8651 (Linking) (DOI: 10.1002/jcc.20207).
BibTex | EndNote
461. Shen, Tongye, Zong, Chenghang, Hamelberg, Donald, McCammon, J. Andrew, Wolynes, Peter G., (2005), "The folding energy landscape and phosphorylation: modeling the conformational switch of the NFAT regulatory domain.", FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 19, 11: pg: 1389--95, 0892-6638 1530-6860, (DOI: 10.1096/fj.04-3590hyp).
BibTex | EndNote
462. Sanner, Michel F., (2005), "A component-based software environment for visualizing large macromolecular assemblies.", Structure (London, England : 1993), 13, 3: pg: 447--62, 0969-2126, (DOI: 10.1016/j.str.2005.01.010).
BibTex | EndNote
463. Santelli, Eugenio, Leone, Marilisa, Li, Chenlong, Fukushima, Toru, Preece, Nicholas E., Olson, Arthur J., Ely, Kathryn R., Reed, John C., Pellecchia, Maurizio, Liddington, Robert C., Matsuzawa, Shu Ichi, (2005), "Structural analysis of Siah1-Siah-interacting protein interactions and insights into the assembly of an E3 ligase multiprotein complex", Journal of Biological Chemistry, 280, 40: pg: 34278--34287, 0021-9258 (Print)$\backslash$n0021-9258 (Linking) (DOI: 10.1074/jbc.M506707200).
BibTex | EndNote
464. Rodrguez, Blanca, Li, Li, Eason, James C., Efimov, Igor R., Trayanova, Natalia A., (2005), "Differences between left and right ventricular chamber geometry affect cardiac vulnerability to electric shocks.", Circulation research, 97, 2: pg: 168--75, 8585348585 1524-4571, (DOI: 10.1161/01.RES.0000174429.00987.17).
BibTex | EndNote
465. Minh, David D. L., Bui, Jennifer M., Chang, Chia-en, Jain, Tushar, Swanson, Jessica M. J., McCammon, J. Andrew, (2005), "The Entropic Cost of Protein-Protein Association: A Case Study on Acetylcholinesterase Binding to Fasciculin-2", Biophysical journal, 89, 4: pg: L25--L27, 00063495, (DOI: 10.1529/biophysj.105.069336).
BibTex | EndNote
466. Michailova, Anushka, Saucerman, Jeffrey, Belik, Mary Ellen, McCulloch, Andrew D., (2005), "Modeling regulation of cardiac KATP and L-type Ca2+ currents by ATP, ADP, and Mg2+.", Biophysical journal, 88, 3: pg: 2234--49, 0006-3495, (DOI: 10.1529/biophysj.104.046284).
BibTex | EndNote
467. Milazzo, Anna-Clare, Leblanc, Philippe, Duttweiler, Fred, Jin, Liang, Bouwer, James C., Peltier, Steve, Ellisman, Mark, Bieser, Fred, Matis, Howard S., Wieman, Howard, Denes, Peter, Kleinfelder, Stuart, Xuong, Nguyen-Huu, (2005), "Active pixel sensor array as a detector for electron microscopy.", Ultramicroscopy, 104, 2: pg: 152--9, 0304-3991, (DOI: 10.1016/j.ultramic.2005.03.006).
BibTex | EndNote
468. Lu, Benzhuo, Zhang, Deqiang, McCammon, J. Andrew, (2005), "Computation of electrostatic forces between solvated molecules determined by the Poisson-Boltzmann equation using a boundary element method", Journal of Chemical Physics, 122, 21: pg: 1--7, 00219606, (DOI: 10.1063/1.1924448).
BibTex | EndNote
469. Lu, Benzhuo, Wong, Chung F., McCammon, J. Andrew, (2005), "Release of ADP from the catalytic subunit of protein kinase A: a molecular dynamics simulation study.", Protein science : a publication of the Protein Society, 14, 1: pg: 159--68, 0961-8368, (DOI: 10.1110/ps.04894605).
BibTex | EndNote
470. Lorenzen-Schmidt, Ilka, Stuyvers, Bruno D., ter Keurs, Henk E. D. J., Date, Moto-o, Hoshijima, Masahiko, Chien, Kenneth R., McCulloch, Andrew D., Omens, Jeffrey H., (2005), "Young MLP deficient mice show diastolic dysfunction before the onset of dilated cardiomyopathy.", Journal of molecular and cellular cardiology, 39, 2: pg: 241--50, 0000000000000 0022-2828, (DOI: 10.1016/j.yjmcc.2005.05.006).
BibTex | EndNote
471. Lorenzen-Schmidt, Ilka, McCulloch, Andrew D., Omens, Jeffrey H., (2005), "Deficiency of actinin-associated LIM protein alters regional right ventricular function and hypertrophic remodeling.", Annals of biomedical engineering, 33, 7: pg: 888--96, 0000000000000 0090-6964
BibTex | EndNote
472. Law, Richard J., Henchman, Richard H., McCammon, J. Andrew, (2005), "A gating mechanism proposed from a simulation of a human alpha7 nicotinic acetylcholine receptor.", Proceedings of the National Academy of Sciences of the United States of America, 102, 19: pg: 6813--8, 0027-8424 (Print)$\backslash$r0027-8424 (Linking) (DOI: 10.1073/pnas.0407739102).
BibTex | EndNote
473. Krishnan, S., Stearn, B., Bhatia, K., (2005), "Web services-based data integration for life science computations":
BibTex | EndNote
474. Krishnan, Sriram, Baldridge, Kim K., Greenberg, Jerry P., Stearn, Brent, Bhatia, Karan, (2005), "An end-to-end web services-based infrastructure for biomedical applications", Proceedings - IEEE/ACM International Workshop on Grid Computing, 2005: pg: 77--84, 0780394933 15505510, (DOI: 10.1109/GRID.2005.1542727).
BibTex | EndNote
475. Henchman, Richard H., Wang, Hai-Long, Sine, Steven M., Taylor, Palmer, McCammon, J. Andrew, (2005), "Ligand-induced conformational change in the alpha7 nicotinic receptor ligand binding domain.", Biophysical journal, 88, 4: pg: 2564--76, 0006-3495, (DOI: 10.1529/biophysj.104.053934).
BibTex | EndNote
476. Healy, Sarah N., McCulloch, Andrew D., (2005), "An ionic model of stretch-activated and stretch-modulated currents in rabbit ventricular myocytes.", Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology, 7 Suppl 2, SUPPL. 2: pg: 128--34, 1099-5129 (Print)$\backslash$r1099-5129 (Linking) (DOI: 10.1016/j.eupc.2005.03.019).
BibTex | EndNote
477. Greenberg, Jerry P., Mock, Steve, Bhatia, Karan, Katz, Mason, Bruno, Greg, Sacerdoti, Federico, Papadopoulos, Phil, Baldridge, Kim K., (2005), "Incorporation of middleware and grid technologies to enhance usability in Computational Chemistry applications", Future Generation Computer Systems, 21, 1: pg: 3--10, 3-540-22114-X 0167739X, (DOI: 10.1016/j.future.2004.09.027).
BibTex | EndNote
478. Gillet, Alexandre, Sanner, Michel, Stoffler, Daniel, Olson, Arthur, (2005), "Tangible interfaces for structural molecular biology.", Structure (London, England : 1993), 13, 3: pg: 483--91, 0969-2126, (DOI: 10.1016/j.str.2005.01.009).
BibTex | EndNote
479. Gao, Fan, Bren, Nina, Burghardt, Thomas P., Hansen, Scott, Henchman, Richard H., Taylor, Palmer, McCammon, J. Andrew, Sine, Steven M., (2005), "Agonist-mediated conformational changes in acetylcholine-binding protein revealed by simulation and intrinsic tryptophan fluorescence", Journal of Biological Chemistry, 280, 9: pg: 8443--8451, 0021-9258 (Print) 0021-9258 00219258, (DOI: 10.1074/jbc.M412389200).
BibTex | EndNote
480. Ferrarini, Luca, Bertelli, Luca, Feala, Jacob, McCulloch, Andrew D., Paternostro, Giovanni, (2005), "A more efficient search strategy for aging genes based on connectivity.", Bioinformatics (Oxford, England), 21, 3: pg: 338--48, 1367-4803, (DOI: 10.1093/bioinformatics/bti004).
BibTex | EndNote
481. Estep, Donald, Holst, Michael, Larson, Mats, (2005), "Generalized Green's Functions and the Effective Domain of Influence", SIAM Journal on Scientific Computing, 26, 4: pg: 1314--1339, 1064-8275, (DOI: 10.1137/S1064827502416319).
BibTex | EndNote
482. Dzubiella, J., McCammon, J. A., (2005), "Substrate concentration dependence of the diffusion-controlled steady-state rate constant.", The Journal of chemical physics, 122, 18: pg: 184902, 0021-9606, (DOI: 10.1063/1.1887165).
BibTex | EndNote
483. Dang, Alan B. C., Guccione, Julius M., Zhang, Peng, Wallace, Arthur W., Gorman, Robert C., Gorman, Joseph H., Ratcliffe, Mark B., (2005), "Effect of ventricular size and patch stiffness in surgical anterior ventricular restoration: a finite element model study.", The Annals of thoracic surgery, 79, 1: pg: 185--93, 1552-6259 (Electronic)$\backslash$r0003-4975 (Link, (DOI: 10.1016/j.athoracsur.2004.06.007).
BibTex | EndNote
484. Coggan, Jay S., Bartol, Thomas M., Esquenazi, Eduardo, Stiles, Joel R., Lamont, Stephan, Martone, Maryann E., Berg, Darwin K., Ellisman, Mark H., Sejnowski, Terrence J., (2005), "Evidence for ectopic neurotransmission at a neuronal synapse.", Science (New York, N.Y.), 309, 5733: pg: 446--51, 1095-9203 (Electronic)$\backslash$r0036-8075 (Link, (DOI: 10.1126/science.1108239).
BibTex | EndNote
485. Coggan, Jay S., Bartol, Thomas M., Esquenazi, Eduardo, Stiles, Joel R., Lamont, Stephan, Martone, Maryann E., Berg, Darwin K., Ellisman, Mark H., Sejnowski, Terrence J., (2005), "Evidence for ectopic neurotransmission at a neuronal synapse.", Science (New York, N.Y.), 309, 5733: pg: 446--51, 1095-9203 (Electronic)$\backslash$r0036-8075 (Link, (DOI: 10.1126/science.1108239).
BibTex | EndNote
486. Chen, Li, Gupta, Amarnath, Kurul, M. Erdem, (2005), "A Semantic-aware RDF Query Algebra", Proc. 11th Intl. Conf. on Management of Data, \ COMAD \ 2005:
BibTex | EndNote
487. Bhatia, Karan, Chandra, Sandeep, Mueller, Kurt, (2005), "GAMA: Grid account management architecture", Proceedings - First International Conference on e-Science and Grid Computing, e-Science 2005, 2005: pg: 413--420, 0780394631, (DOI: 10.1109/E-SCIENCE.2005.45).
BibTex | EndNote
488. Ashihara, Takashi, Trayanova, Natalia A., (2005), "Cell and tissue responses to electric shocks.", Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology, 7 Suppl 2, SUPPL. 2: pg: 155--65, 1099-5129 (Print) 1099-5129, (DOI: 10.1016/j.eupc.2005.03.020).
BibTex | EndNote
489. Chen, L., Gupta, A., Kurul, M. E., (2005), "Efficient Algorithms for Pattern Matching on Directed Acyclic Graphs", Icde: pg: 384--385, 0-7695-2285-81084-4627, (DOI: 10.1109/ICDE.2005.56).
BibTex | EndNote
490. Akiyama, Toyokazu, Teranishi, Yuuichi, Nozaki, Kazunori, Kato, Seiichi, Shimojo, Shinji, Peltier, Steven T., Lin, Abel, Molina, Tomas, Yang, George, Lee, David, Ellisman, Mark, Naito, Sei, Koike, Atsushi, Matsumoto, Shuichi, Yoshida, Kiyokazu, Mori, Hirotaro, (2005), "Scientific Grid activities and PKI deployment in the Cybermedia Center, Osaka University.", Journal of clinical monitoring and computing, 19, 4-5: pg: 279--94, 0780390741 1387-1307, (DOI: 10.1007/s10877-005-0674-1).
BibTex | EndNote
491. Zhang, Deqiang, Konecny, Robert, Baker, Nathan A., McCammon, J. Andrew, (2004), "Electrostatic interaction between RNA and protein capsid in cowpea chlorotic mottle virus simulated by a coarse-grain RNA model and a Monte Carlo approach", Biopolymers, 75, 4: pg: 325--337, 8585348585 0006-3525, (DOI: 10.1002/bip.20120).
BibTex | EndNote
492. Yerushalmi, Roie, Scherz, Avigdor, Baldridge, Kim K., (2004), "Direct experimental evaluation of charge scheme performance by a molecular charge-meter.", Journal of the American Chemical Society, 126, 18: pg: 5897--905, 0002-7863, (DOI: 10.1021/ja039545u).
BibTex | EndNote
493. Xu, Lan, Li, Chenglong, Olson, Arthur J., Wilson, Ian A., (2004), "Crystal structure of avian aminoimidazole-4-carboxamide ribonucleotide transformylase in complex with a novel non-folate inhibitor identified by virtual ligand screening.", The Journal of biological chemistry, 279, 48: pg: 50555--65, 0021-9258 (Print)$\backslash$r0021-9258 (Linking) (DOI: 10.1074/jbc.M406801200).
BibTex | EndNote
494. Xie, F., (2004), "A simulation study of the effects of cardiac anatomy in ventricular fibrillation", Journal of Clinical Investigation, 113, 5: pg: 686--693, 0021-9738, (DOI: 10.1172/JCI200417341).
BibTex | EndNote
495. Trylska, Joanna, Grochowski, Pawel, McCammon, J. Andrew, (2004), "The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV-1 protease.", Protein science : a publication of the Protein Society, 13, 2: pg: 513--28, 0961-8368, (DOI: 10.1110/ps.03372304).
BibTex | EndNote
496. Swanson, Jessica M. J., Henchman, Richard H., McCammon, J. Andrew, (2004), "Revisiting free energy calculations: a theoretical connection to MM/PBSA and direct calculation of the association free energy.", Biophysical journal, 86, 1 Pt 1: pg: 67--74, 0006-3495, (DOI: 10.1016/S0006-3495(04)74084-9).
BibTex | EndNote
497. Sudholt, Wibke, Baldridge, Kim K., Abramson, David, Enticott, Colin, Garic, Slavisa, (2004), "Parameter scan of an effective group difference pseudopotential using grid computing", New Generation Computing, 22, 2: pg: 137--146, 0288-3635, (DOI: 10.1007/BF03040952).
BibTex | EndNote
498. Sudholt, Wibke, Baldridge, Kim K., Abramson, David, Enticott, Colin, Garic, Slavisa, (2004), "Applying Grid Computing to the Parameter Sweep of a Group Difference Pseudopotential": pg: 148--155, 978-3-540-22116-6 03029743, (DOI: 10.1007/978-3-540-24685-5_19).
BibTex | EndNote
499. Song, Yuhua, Zhang, Yongjie, Shen, Tongye, Bajaj, Chandrajit L., McCammon, J. Andrew, Baker, Nathan A., (2004), "Finite element solution of the steady-state Smoluchowski equation for rate constant calculations.", Biophysical journal, 86, 4: pg: 2017--29, 3143622040 0006-3495, (DOI: 10.1016/S0006-3495(04)74263-0).
BibTex | EndNote
500. Song, Yuhua, Zhang, Yongjie, Shen, Tongye, Bajaj, Chandrajit L., McCammon, J. Andrew, Baker, Nathan a, (2004), "Finite element solution of the steady-state Smoluchowski equation for rate constant calculations.", Biophysical journal, 86, 4: pg: 2017--29, 3143622040 0006-3495, (DOI: 10.1016/S0006-3495(04)74263-0).
BibTex | EndNote
Reference Type
Author Geography
Author Affiliation

Export Multiple Citations

Check the citations that you would like to have exported.

|